Stochastic analysis of biochemical reaction networks with absolute concentration robustness.

نویسندگان

  • David F Anderson
  • Germán A Enciso
  • Matthew D Johnston
چکیده

It has recently been shown that structural conditions on the reaction network, rather than a 'fine-tuning' of system parameters, often suffice to impart 'absolute concentration robustness' (ACR) on a wide class of biologically relevant, deterministically modelled mass-action systems. We show here that fundamentally different conclusions about the long-term behaviour of such systems are reached if the systems are instead modelled with stochastic dynamics and a discrete state space. Specifically, we characterize a large class of models that exhibit convergence to a positive robust equilibrium in the deterministic setting, whereas trajectories of the corresponding stochastic models are necessarily absorbed by a set of states that reside on the boundary of the state space, i.e. the system undergoes an extinction event. If the time to extinction is large relative to the relevant timescales of the system, the process will appear to settle down to a stationary distribution long before the inevitable extinction will occur. This quasi-stationary distribution is considered for two systems taken from the literature, and results consistent with ACR are recovered by showing that the quasi-stationary distribution of the robust species approaches a Poisson distribution.

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Supporting Online Material for: Stochastic analysis of biochemical reaction networks with absolute concentration robustness

2 Background, terminology, and notation 2 2.1 Chemical reaction networks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.2 Deterministic chemical reaction systems . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 2.2.1 Absolute concentration robustness . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.2.2 Reformulation of equ...

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عنوان ژورنال:
  • Journal of the Royal Society, Interface

دوره 11 93  شماره 

صفحات  -

تاریخ انتشار 2014